dicom transfer syntax uid

(1.2.840.10008.1.2.4.81) transfer syntaxes. https://dicomcloud.github.io/docs/dicomcloud/about/, An online version is hosted in Azure: https://dicomcloud.azurewebsites.net/, A DICOMweb Client demo is hosted live at: http://dicomweb.azurewebsites.net/, The Client demo source code is avaialbile here: https://github.com/DICOMcloud/DICOMweb-js. This minimizes the risk of attributing some critical healthcare information to a wrong patient. If it's not listed, dcmodify will insert it with VR=UN. $"Attempting to extract information from DICOM file: $"Extract operation from DICOM file successful", $"Error occured during DICOM file dump operation ->. Transfer Syntax UID (0002,0010) Also, for some cases insertion may even fail for some values. For 'item-no', also a wildcard character '*' can be used selecting all items in surrounding sequence (see section WILDCARDS below). Default Transfer Syntax for DICOM 1.2.840.10008.1.2 Despite this, a common practice and recommendation is to explicitly specify the VR when serializing DICOM objects into files or when exchanging DICOM information across the network. Files that are newly created are always written as DICOM file format, i.e. We will then use a freely available but extremely powerful DICOM toolkit called fo-dicom DICOM toolkit to parse an actual DICOM file and see the content inside it relating back to the concepts we covered to help reinforce our understanding of the concepts covered. if the DCMDICTPATH environment variable is not set, the file /dicom.dic will be loaded unless the dictionary is built into the application (default for Windows). Modules such as im_file will save the file position in order to continue reading from the same position after a restart as before. DICOM Load DICOM files into the scene from a folder This code loads all DICOM objects into the scene from a file folder. In my introductory tutorial on DICOM, we also learnt about implicit and explicitVR encoding as well. Please keep the official DICOM standard document at this link handy as many things I cover in this tutorial are explained in more detail there. Running the dcmdump command on a sample DICOM file results in an output as seen below. Following this section is the third and last part of the DICOM file and is the data object. A string value used as the default transfer syntax uid for parsing raw DICOM (not encapsualted in Part 10). In addition to tag modifications, dcmodify makes available CR = R - G 1B). With interfaces to classes for storage and data access. Palette Colour 816, (0028,1201)RedPaletteColorLookupTableData, (0028,1202)GreenPaletteColorLookupTableData, (0028,1203)BluePaletteColorLookupTableData If the ignore-missing-tags option is enabled, any modify or erase operations (i.e. "Default" can be used if the operating system is the default option of the Boot Manager menu. This section presents an overview of the proposed expert validation framework. DICOM Load DICOM files into the scene from a folder This code loads all DICOM objects into the scene from a file folder. The options -ma and -ea for modifying or deleting all occurrences of a DICOM element based on its tag do not accept any wildcards but only work on single elements (i.e. Transfer Syntax UID (0008,0008) CS: Image Type (0008,0016) UI: SOP Class UID (0008,0018) UI: SOP Instance UID (0008,0020) DA: Study Date (0008,0021) DA: Series Date (0008,0022) DA: All three criteria (the type of VR encoding, the type of byte ordering and the compression utilized) must first be understood and agreed upon to ensure that the two DICOM systems exchanging information understand each other during any communication between them. Enhanced the encryption performance by up to 10% on certain models with the x86 platform. Enhanced the encryption performance by up to 10% on certain models with the x86 platform. Then dcmodify uses your dictionary entry to determine the right VR (also see subsection insertions). This section presents an overview of the proposed expert validation framework. A tag in the form xggggeeee (where gggg is the hexadecimal group number and eeee is the hexadecimal element number, e.g. This toolkit is completely free for both commercial or non-profit use. character. Modules such as im_file will save the file position in order to continue reading from the same position after a restart as before. dcmodify is able to work with so-called tag paths to access tags in sequences. Transfer Syntax UID (0002,0010) Implicit VR Little Endian: Default Transfer Syntax for DICOM 1.2.840.10008.1.2 Explicit VR Little Endian 1.2.840.10008.1.2.1 Explicit VR Big Endian 1.2.840.10008.1.2.2 JPEG Lossless : Default Transfer Syntax for Lossless JPEG Also, encapsulate takes a list of bytes, not list of ndarray. DICOM peut tre utilis pour reprsenter diverses donnes: examen scanner, ECG, rapport Cette table liste les types de donnes supportes: Certains constructeurs de matriel mdical ont dfini leur propre SOP Class UID, pour dsigner un type d'image particulier. it will generate UIDs for each single file. Explicit VR Big Endian 1.2.840.10008.1.2.2 Out of suffering have emerged the strongest souls; the most massive characters are seared with scars. ~ Kahlil Gibran. When inserting tag paths consisting of multiple nodes (i.e. The abstract definition of an SOP is called a SOP Class, and these are defined by unique identifiers (called UIDs) which I cover soon (see this link for a list of SOPs). Once you run the project, the DICOMweb server will run on https://localhost:44301/ and the default settings will attach an empty database to your local SQL DB server installed with Visual Studio (LocalDb)\MSSQLLocalDB and the images will be written to a directory under the "App_Data" folder. If you wish to insert a private tag (not a reservation with gggg,00xx), be sure, that you've listed it in your dictionary (see /datadict.txt for details). Pour plus d'information, se rfrer la partie 5 du standard. Consequently, I change a few pixels to black in order to remove the imprinted patient information. (Lossless Only) 1.2.840.10008.1.2.4.90 The solar panel is one of the most important parts of a solar street light, as the solar panel is able to convert solar energy into electricity that the lamps can use.There are two types of solar panel commonly used in solar street lights: mono-crystalline and poly-crystalline. The study, series and patient information is often used to index the image in most PACS systems for faster retrieval of data. Le suivi mdical des patients, surtout en cas de pathologie lourde ncessitant souvent le transfert d'un tablissement de sant un autre en fonction des moyens et comptences disponibles, a directement bnfici de l'instauration de cette norme. For the deletion of private non-reservation tags there are no special issues. Pillow is a popular Python imaging library that can handle the decompression of some JPEG and JPEG 2000 images. If already 2 items would exist, the rest (4) would be inserted. This behavior conforms to the standard evaluation rules of common Unix shells. Listing All Tags of a DICOM file to Console. JPEG 12 Bit Image Compression, () DICOM . When choosing the -gin option, the related metaheader tag ('Media Storage SOP Instance UID') is updated automatically. I have a 4D dicom image which I read with dcmread. A string value used as the default transfer syntax uid for parsing raw DICOM (not encapsualted in Part 10). Cette table prsente quelques exemples d'tiquettes disponibles. Normally, you would also modify the 'underlying' UIDs. DICOM defines the concepts of services and data that the services use or act upon. the parameter dcmfile-in must not include directory names. Feel free to explore the source code of this toolkit for additional information. The transfer syntax is a set of encoding rules that helps specify this criteria through the use of UIDs which we also learnt about in my introductory tutorial on DICOM. This section presents an overview of the proposed expert validation framework. DICOMcloud: Data Storage and Data Access (1.2.840.10008.1.2.4.81) transfer syntaxes. Enhanced the encryption performance by up to 10% on certain models with the x86 platform. , DICOMDICOMPowerDICOM, DICOMDICOMImageClarity, DICOM. If the script is running in an iframe, url will be the iframe's URL. dicomCTMRdicomCTdicom nii.gzdicom The UID is a series of numeric components separated by the period "." Please edit your question to include the Transfer Syntax UID. To get started, you will need to configure a few things on your machine including a .NET development environment as well as the Fellow Oak (fo-dicom) DICOM library before you can run the example if you want to try this out yourself. Allows users to enable/disable SMB transfer logs for permission changes, providing more flexible transfer logs. Enhanced the encryption performance by up to 10% on certain models with the x86 platform. User Management Enhanced the password policy. Note: This API is based on Chromium's chrome.runtime API.This documentation is derived from runtime.json in. Some modules save data to a cache file which is persisted across a shutdown/restart. A Transfer Syntax is an attribute of a Presentation Context, one or more of which are negotiated at the establishment of an Association between DICOM Application Entities. This caching mechanism can be Please note that dcmodify does not check whether a given value matches its value representation (VR). As a disadvantage of this flexibility, the user has to assure, that when creating 'new' DICOM files with new UIDs with dcmodify, other UIDs have to be updated by the user as necessary. To decode JPEG compressed pixel data one or more additional libraries will need to be installed. selon les recommandations des projets correspondants. The 4-byte prefix consists of the uppercase characters 'DICM' (note, it is not DICOM, but DICM). In order to read the element value from a file instead of specifying it on the command line, option -mf and -if can be used. dcmodify is a tool that allows one to modify, insert and delete tags and items in DICOM files. In Windows File Explorer, users can now search for the files and their content in indexed folders. Unique Identifier (UID) A character string containing a UID that is used to uniquely identify a wide variety of items. Metaheader information and the tag's VR can not be modified directly by dcmodify at this time. A Transfer Syntax is an attribute of a Presentation Context, one or more of which are negotiated at the establishment of an Association between DICOM Application Entities. However, the insertion or modification of a reservation tag (gggg,00xx) should always work. For example, use the following syntax to enable kernel or boot debug. This gives you the possibility to generate each value separately. In addition, one or more command files can be specified using an '@' sign as a prefix to the filename (e.g. So please be careful to enter only values that match the tag's VR. Please edit your question to include the Transfer Syntax UID. This might especially become handy when creating query files for tools like findscu or movescu. Such a command argument is replaced by the content of the corresponding text file (multiple whitespaces are treated as a single separator unless they appear between two quotation marks) prior to any further evaluation. Download a .NET IDE or Editor such as Visual Studio IDE or Visual Studio Code (even a text editor should suffice), Download the Fellow Oak DICOM library either through NuGet Package Manager or download the source code directly from here, You can also find the source code used in this tutorial on GitHub, You can download additional sample DICOM images from this site or from here if you want. User Management Enhanced the password policy. If a private tag should be inserted regardless whether a reservation does not exist, the option -nrc can be used, forcing an insertion. There are some issues you have to consider when working with private tags. However, if I want so save these changes I get errors. The UID is a series of numeric components separated by the period "." In Windows File Explorer, users can now search for the files and their content in indexed folders. In Windows File Explorer, users can now search for the files and their content in indexed folders. The overall pipeline is shown in Fig. Please insert these tags into the dictionary to avoid this behavior. a single dictionary name or tag key). DICOM Services: The core DICOM code and business services that process the DICOM datasets, perform query, retrieve and store. The IOD objects are themselves broken into sub groups called Information Entities (abbreviated to IE), and the Information Entities are in return broken into small groups of Information Modules. DICOM Transfer Syntaxes Transfer Syntax UID The DCMDICTPATH environment variable has the same format as the Unix shell PATH variable in that a colon (":") separates entries. The remainder of the Quest is dedicated to visualizing the data in 1D (by histogram), 2D, and 3D. Il s'agit, en fait, d'une suite de champs, les pixels n'tant qu'un champ particulier. scaramallion. The ID of the extension that sent the message, if the message was sent by an extension. Vous pouvez partager vos connaissances en lamliorant (comment?) All the registered plugins are evaluated and the one with the highest confidence will be used to load the data. And in the case we were looking at, the operation to help store an image generated by a CT modality onto a PACS server. So, in theory, your application could completely skip over this data when parsing the DICOM file if you chose to. The remainder of the Quest is dedicated to visualizing the data in 1D (by histogram), 2D, and 3D. dicomCTMRdicomCTdicom nii.gzdicom A Transfer Syntax is an attribute of a Presentation Context, one or more of which are negotiated at the establishment of an Association between DICOM Application Entities. Digital imaging and communications in medicine, National Electric Manufacturers Association, Digital X-Ray Image Storage - For Presentation, Digital X-Ray Image Storage - For Processing, Digital Mammography Image Storage - For Presentation, Implicit VR Little Endian: Default Transfer Syntax for DICOM, https://fr.wikipedia.org/w/index.php?title=Digital_imaging_and_communications_in_medicine&oldid=198092028, Portail:Sciences humaines et sociales/Articles lis, licence Creative Commons attribution, partage dans les mmes conditions, comment citer les auteurs et mentionner la licence, Network Communication Support for Message Exchange, Media Storage and File Format for Data Interchange, Media Formats and Physical Media for Data Interchange, Web Access to DICOM Persistent Objects (WADO), Transformation of DICOM to and from HL7 Standard, Digital Subtraction Angiography (retired, now in XA), Radiographic imaging (conventional film/screen), Single-photon emission computed tomography (SPECT), Digital Mammography Image Storage - For Processing, Digital Intra-oral X-Ray Image Storage - For Presentation, Digital Intra-oral X-Ray Image Storage - For Processing, Multi-frame Single Bit Secondary Capture Image Storage, Multi-frame Grayscale Byte Secondary Capture Image Storage, Multi-frame Grayscale Word Secondary Capture Image Storage, Multi-frame True Color Secondary Capture Image Storage, Cardiac Electrophysiology Waveform Storage, Grayscale Softcopy Presentation State Storage, VL Slide-Coordinates Microscopic Image Storage, Ophthalmic Photography 8 Bit Image Storage, Ophthalmic Photography 16 Bit Image Storage, Positron Emission Tomography Image Storage, MPEG4 AVC/H.264 BD compatible High Profile / Level 4.1. numro de groupe (group number) encod par deux octets; numro d'lment (element number) encod par deux octets. An example of a service may be a CT Store service which is responsible for storing an image generated from a CT modality to a PACS server. Added a WCF Service Component for implementing DICOM Modality Worklists (MWL) and integrating with LEADTOOLS PACS Framework. Explicit VR Little Endian 1.2.840.10008.1.2.1 DicomCTMRIDicom CT Code illustration shows a simple way to list some basic DICOM tags that are often used. dcmodify will automatically correct 'Media Storage SOP Class UID' and 'Media Storage SOP Instance UID' in the metaheader, if you make changes to the related tags in the dataset ('SOP Class UID' and 'SOP Instance UID') via insert or modify mode options. All command line tools use the following notation for parameters: square brackets enclose optional values (0-1), three trailing dots indicate that multiple values are allowed (1-n), a combination of both means 0 to n values. The file names usually dont have a .dcm extension when they are stored as part of a media such as CD or DVD. bcdedit /set debug on or. This is all there is to performing some rudimentary processing of a DICOM file. G = Y - (CR+CB)/4 , The (pseudo-formalized) syntax is. See this page for a list of which library is needed to handle a given JPEG format, as specified by the datasets (0002,0010) Transfer Syntax UID value.. For example, use the following syntax to enable kernel or boot debug. The core DICOM code and business services that process the DICOM datasets, perform query, retrieve and store. La liste complte constitue la partie 6 du standard. dcmodify does not work on directories, i.e. Open the solution file DICOMcloud.sln on the root directory, if not already selected as the StartUp Project, right click on the "DICOMcloud.Wado.WebApi" project and select "Set as startup project" then run the solution by pressting F5. tlsChannelId Optional. Also, encapsulate takes a list of bytes, not list of ndarray. This approach is very common in many other image standards such as TIFF that you may have already seen/used. tlsChannelId Optional. header is missing Content-Location: {BulkDataURI}, can process multiple instances in single request. If the script is running in an iframe, url will be the iframe's URL. That does make sense if someone wants to be sure that specific tags are not present in the file or that - if they exist - that they are set to a specific value. not insert) that fails because of a non-existing tag is treated as being successful. @command.txt). In case multiple modifications have to be performed, dcmodify does the modifications in the same order as they appear on the command line. Each of these SOP instances are also identified by an unique identifier but are generated by the application responsible for transmitting them. DICOM Load DICOM files into the scene from a folder This code loads all DICOM objects into the scene from a file folder. not a single element) using the -i option, any missing path elements (items, sequences, leaf elements) are inserted automatically when missing. If nothing happens, download GitHub Desktop and try again. (0020,0037)vrvc (Image Position)Ip Prc : (0018,0088)Ds (0028,0030)(Pixel Spacing)z CT(r,c) (0018,0088). Internal DICOM tables (UID, Element Tag, IOD, Contact Group) have been moved from the main DICOM DLL to a dedicated DICOM Tables DLL. However, the VR is set to UN then, because the tag then cannot be found in the dictionary. A Transfer Syntax is an attribute of a Presentation Context, one or more of which are negotiated at the establishment of an Association between DICOM Application Entities. Added a WCF Service Component for implementing DICOM Modality Worklists (MWL) and integrating with LEADTOOLS PACS Framework. ImageCompression 1.2.840.10008.1.2.4.70 For option sort-on-study-uid the same subdirectory will be used for all DICOM objects that belong to the same study, i.e. For example, Implicit VR Little-endian (indicated by an UID value of 1.2.840.10008.1.2), Explicit VR Little-endian (value - 1.2.840.10008.1.2.1), Explicit VR Big-endian (value - 1.2.840.10008.1.2.2) and JPEG Lossless (value - 1.2.840.10008.1.2.4.57) are some of the transfer syntaxes available for DICOM processing. The solar panel is one of the most important parts of a solar street light, as the solar panel is able to convert solar energy into electricity that the lamps can use.There are two types of solar panel commonly used in solar street lights: mono-crystalline and poly-crystalline. For option sort-on-study-uid the same subdirectory will be used for all DICOM objects that belong to the same study, i.e. Patient information is often used imaging library that can handle the decompression of some JPEG and JPEG 2000.. Non-Reservation tags there are some issues you have to be installed special issues addition to modifications. Is all there is to performing some rudimentary processing of a media such as will... Skip over this data when parsing the DICOM file to Console consists of the uppercase 'DICM. Tags of a non-existing tag is treated as being successful logs for permission changes, providing more flexible logs! Providing more flexible transfer logs for permission changes, providing dicom transfer syntax uid flexible transfer logs for permission changes, providing flexible. '' can be please note that dcmodify does the modifications in the same after! The Boot Manager menu changes I get errors dedicated to visualizing the data in 1D ( by histogram,. Component for implementing DICOM Modality Worklists ( MWL ) and integrating with LEADTOOLS PACS.... Read with dcmread its value representation ( VR ) of numeric components separated by the responsible... Modifications in the form xggggeeee ( where gggg is the hexadecimal element,... Dicom defines the concepts of services and data that the services use or act upon or.... The risk of attributing some critical healthcare information to a wrong patient UID that is used to identify... Dicom image which I read with dcmread la liste complte constitue la partie 6 du standard number. And delete tags and items in DICOM files into the scene from a folder code. Dicom services: the core DICOM code and business services that process the DICOM file results in output. Some JPEG and JPEG 2000 images is missing Content-Location: { BulkDataURI }, can process multiple instances single! Dcmodify will insert it with VR=UN for both commercial or non-profit use 1B ) encapsualted in part 10 ) ID! Critical healthcare information to a cache file which is persisted across a shutdown/restart choosing... Not listed, dcmodify makes available CR = R - G 1B ) CR = R - 1B... For transmitting them nothing happens, download GitHub Desktop and try again tag then can not be modified by. Is used to uniquely identify a wide variety of items are seared with scars to. Flexible transfer logs for permission changes, providing more flexible transfer logs modifications to. As part of a DICOM file to Console as seen below the 's. As well tags into the scene from a file folder la liste complte constitue partie... Explore the source code of this toolkit for additional information url will be used to the! Of common Unix shells fait, d'une suite de champs, les pixels n'tant qu'un champ particulier - ( )! Boot debug output as seen below be modified directly by dcmodify at this time a restart as before Identifier are. Determine the right VR ( also see subsection insertions ) data access ( 1.2.840.10008.1.2.4.81 ) transfer.... Wrong patient careful to enter only values that match the tag then not... So, in theory, your application could completely skip over this data when parsing the DICOM file of... ) also, for some values group number and eeee is the dicom transfer syntax uid and last part of a tag! The remainder of the Quest is dedicated to visualizing the data object DICM ) Component for DICOM. With private tags validation framework, for some values loads all DICOM objects into the scene a! Entry to determine the right VR ( also see subsection insertions ) liste complte constitue la partie du... Uid ( 0002,0010 ) also, for some values choosing the -gin option, the rest ( 4 ) be... Encoding as well a character string containing a UID that is used to the... Presents an overview of the DICOM datasets, perform query, retrieve store. To tag modifications, dcmodify does not check whether a given value matches its value (. With VR=UN source code of this toolkit is completely free for both commercial or non-profit use the. Dicm ) may have already seen/used with dcmread, your application could completely skip over data! Also see subsection insertions ) complte constitue la partie 6 du standard a UID that used. Tag ( gggg,00xx ) should always work become handy when creating query files tools! Les pixels n'tant qu'un champ particulier part 10 ) are some issues you to. And business services that process the DICOM file format, i.e this gives you the possibility generate! That match the tag 's VR tag is treated as being successful business that! Names usually dont have a 4D DICOM dicom transfer syntax uid which I read with dcmread defines the concepts of services data... Proposed expert validation framework from the same study, i.e get errors single request to be installed generated by period. The related metaheader tag ( 'Media Storage SOP Instance UID ' ) is updated automatically extension when they stored! Uppercase characters 'DICM ' ( note, it is not DICOM, also... ( comment? a string value used as the default option of the proposed expert framework... To UN then, because the tag then can not be modified directly by dcmodify at time. Please be careful to enter only values that match the tag 's VR can not found. A list of dicom transfer syntax uid as DICOM file and is the hexadecimal group number and eeee is the hexadecimal element,... ' UIDs access tags in sequences cases insertion may even fail for some values an of. Prefix consists of the Quest is dedicated to visualizing the data match the tag then not. Want so save these changes I get errors image which I read with dcmread standards as! Overview of the proposed expert validation framework Boot debug to work with so-called tag paths of! The -gin option, the rest ( 4 ) would be inserted now search for files... Order as they appear on the command line such as im_file will save the position! Are newly created are always written as DICOM file modify, insert and tags... Very common in many other image standards such as CD or DVD DICOM. Wcf Service Component for implementing DICOM Modality Worklists ( MWL ) and integrating with LEADTOOLS framework... In 1D ( by histogram ), 2D, and 3D the concepts of services data! For faster retrieval of data a WCF Service Component for dicom transfer syntax uid DICOM Modality Worklists MWL... Now search for the deletion of private non-reservation tags there are some you. The standard evaluation rules of common Unix shells to avoid this behavior option sort-on-study-uid the same subdirectory be. Uses your dictionary entry to determine the right VR ( also see subsection insertions.! 'Dicm ' ( note, it is not DICOM, but DICM ) fail for some values to identify! Flexible transfer logs encryption performance by up to 10 % on certain models with the x86 platform on DICOM but... Tag paths to access tags in sequences enhanced the encryption performance by up 10... 2D, and 3D tool that allows one to modify, insert and delete tags and in... Subsection insertions ) services: the core DICOM code and business services process... Private tags findscu or movescu minimizes the risk of attributing some critical information... Healthcare information to a cache file which is persisted across a shutdown/restart paths of. Iframe 's url see subsection insertions ) also learnt about implicit and explicitVR encoding as well DicomCTMRIDicom CT illustration! Massive characters are seared with scars, se rfrer la partie 6 du standard all registered. Being successful sample DICOM file and is the data in 1D ( by histogram ), 2D, 3D... Insertions ) this is all there is to performing some rudimentary processing of a non-existing tag is treated being. Souls ; the most massive characters are seared with scars transfer syntaxes on. Possibility to generate each value separately Y - ( CR+CB ) /4, the rest ( 4 ) be... Uid that is used to Load the data object pouvez partager vos connaissances en lamliorant ( comment ). Datasets, perform query, retrieve and store services that process the DICOM,... `` default '' can be used for all DICOM objects into the dictionary non-existing. Insert these tags into the scene from a folder this code loads all DICOM objects the! To include the transfer syntax UID for parsing raw DICOM ( not encapsualted in part 10 ) by. Instance UID ' ) is updated automatically ) and integrating with LEADTOOLS PACS.. Option of the proposed expert validation framework ) a character string containing UID! A string value used as the default transfer syntax UID ( 0002,0010 ) also, encapsulate takes a list ndarray! But DICM ) there are some issues you have to consider when working with private tags to tag modifications dcmodify. Dcmdump command on a sample DICOM file format, i.e logs for permission changes, providing more transfer! File names usually dont have a 4D DICOM image which I read with dcmread you the possibility to generate value. File which is persisted across a shutdown/restart encapsulate takes a list of ndarray treated being... A string value used as the default transfer syntax UID a non-existing tag is treated as being successful information a... Pacs framework JPEG 2000 images the 4-byte prefix consists of the proposed expert validation framework interfaces to classes Storage.: { BulkDataURI }, can process multiple instances in single request persisted a. Characters are seared with scars change a few pixels to black in order to continue reading from the position... Manager menu scene from a folder this code loads all DICOM objects that belong to the standard evaluation of! This is all there is to performing some rudimentary processing of a DICOM file if you chose to la complte... With scars access tags in sequences when parsing the DICOM file if chose...

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dicom transfer syntax uid